Play
Tutorial
Install
How It Works
Team
GitHub
downloading data
Dataset
outbreak_MRSA-orange_deID parsnp SNPs – Oct 20 2019
Similarity threshold
parsnp SNPs
Merging & prefiltering
Merge similar specimens from same patient
Only show putative transmissions (≥1 link to another patient)
Heatmap view
Network map view
Order rows/columns
by clustering order
by Anonymized Patient ID
by Order Date
by Collection Unit
by MLST Subtype
N
clusters detected
TSV
Your largest outbreak cluster is as big as the largest Mash precluster. Consider increasing
MAX_CLUSTER_SIZE
;
see the documentation
for more details.
Filter genomes by specimen order dates
Animate
Histogram of
distances
to closest previous genome
Collected isolates
0
Gain
Opacity
Show genomic network